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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40825553_40825896_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40825553 - 40825896
Intron Length:
344

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTCC
5'SS Class:
strong_major
3'SS Sequence:
GTTTGATTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAG
U12 Branch Point Sequence:
CTGTGTTTGATT
Flanking Amino Acid:
FLLPSRPAQRGFHARLNRLP
Intron Amino Acid Position:
301

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
71.9
34.5
Major BPS
76
0.65
1.5
85.7
34.9
Major PPT
81.5
0.71
0.9
77.7
40.6
Minor 5ss
39.7
-1.2
2.9
50.9
45.8
Minor BPS
53.4
0.19
1.8
69.68
42.6

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037338
40814421 - 40845432
31012
ENSAPLT00000031424
40814421 - 40845432
31012
ENSAPLT00000012837
40798854 - 40845432
46579
ENSAPLT00000038136
40814421 - 40847342
32922