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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40825977_40830995_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
40825977 - 40830995
Intron Length:
5019

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTCCCT
5'SS Class:
major
3'SS Sequence:
CTTGACTTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
CTTTGCTTAAAT
Flanking Amino Acid:
RKGRRRLVGKFNPLSPLYSL
Intron Amino Acid Position:
328

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
60.8
43.6
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
79
0.65
0.9
69.3
41.4
Minor 5ss
46.7
-0.3
2.8
66.6
44.2
Minor BPS
67.8
0.64
1.9
85.06
41.4

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031424
40814421 - 40845432
31012