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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40831082_40831683_F

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
40831082 - 40831683
Intron Length:
602

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTCCC
5'SS Class:
strong_major
3'SS Sequence:
TATGAAATCCAAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
TTTTGCTGACTA
Flanking Amino Acid:
RRCSPAHCTASVGGGLGLGG
Intron Amino Acid Position:
414

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.1
69.7
41.3
Major BPS
66.7
0.41
1
57.8
39
Major PPT
51.8
0.04
1.2
47
43.6
Minor 5ss
41
-1
2.8
54.5
42.6
Minor BPS
50.9
0.03
2.1
71.86
40.7

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037338
40814421 - 40845432
31012