About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40840157_40845069_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
40840157 - 40845069
Intron Length:
4913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACCTGG
5'SS Class:
major
3'SS Sequence:
TTTTATATTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTTCCTGCAATT
Flanking Amino Acid:
AAASTSSPTSATLSVHTDAA
Intron Amino Acid Position:
423

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.7
0.56
1.2
60.6
46.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
86.3
0.82
0.8
78.3
39.6
Minor 5ss
48.8
-0.1
2.6
65
46.2
Minor BPS
49.9
0.07
2.2
77.39
39.6

Associated Gene:

Gene:
GPATCH2L
Ensembl Gene ID:
ENSAPLG00000012320
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012837
40798854 - 40845432
46579
ENSAPLT00000038136
40814421 - 40847342
32922
ENSAPLT00000037338
40814421 - 40845432
31012
ENSAPLT00000031424
40814421 - 40845432
31012