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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40888366_40894139_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
40888366 - 40894139
Intron Length:
5774

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
GATCTATTTATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATCAA
U12 Branch Point Sequence:
GTTATATCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
70.2
0.5
1
72.1
33
Major PPT
72.7
0.51
0.9
65.8
39.7
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
48.2
-0.1
1.8
61.3
37.7

Associated Gene:

Gene:
ESRRB
Ensembl Gene ID:
ENSAPLG00000012470
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031807
40887763 - 41022180
134418