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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40939482_40982213_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40939482 - 40982213
Intron Length:
42732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCA|GTGAGTTGC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
AGGCCACTGAGT
Flanking Amino Acid:
CISDPLGYHNQLLGRMATEE
Intron Amino Acid Position:
17

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.3
0.5
1
63.3
38.1
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
37.3
-1.4
2.9
49.2
41.2
Minor BPS
40.2
-0.6
2
53.94
40.9

Associated Gene:

Gene:
ESRRB
Ensembl Gene ID:
ENSAPLG00000012470
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027834
40939432 - 41022180
82749