About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_40976458_40982213_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
40976458 - 40982213
Intron Length:
5756

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGATAC
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTGAG
U12 Branch Point Sequence:
AGGCCACTGAGT
Flanking Amino Acid:
EYGGLLGEGAGLLGRMATEE
Intron Amino Acid Position:
21

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1
68.2
33.3
Major BPS
48.9
-0
1.5
46.7
38.9
Major PPT
85.8
0.81
0.7
80.7
24.4
Minor 5ss
32.3
-2
3
33.4
42
Minor BPS
40.2
-0.6
2
53.94
40.9

Associated Gene:

Gene:
ESRRB
Ensembl Gene ID:
ENSAPLG00000012470
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026767
40976309 - 41022180
45872