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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41012264_41020950_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41012264 - 41020950
Intron Length:
8687

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAGCCC
5'SS Class:
major
3'SS Sequence:
TCCCTCCCCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTGAT
U12 Branch Point Sequence:
TTTCTCTTCTCC
Flanking Amino Acid:
TLKALALANSDSMHIEDMDA
Intron Amino Acid Position:
353

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.44
1.1
55.4
40.1
Major BPS
73.6
0.59
1.2
65.3
43.7
Major PPT
73.8
0.54
0.7
65.3
30.6
Minor 5ss
30.3
-2.3
3.5
42.7
44.4
Minor BPS
43.3
-0.5
3.6
71.17
40.3

Associated Gene:

Gene:
ESRRB
Ensembl Gene ID:
ENSAPLG00000012470
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026767
40976309 - 41022180
45872
ENSAPLT00000022906
40893874 - 41022180
128307
ENSAPLT00000012996
40900911 - 41022180
121270
ENSAPLT00000031807
40887763 - 41022180
134418
ENSAPLT00000027834
40939432 - 41022180
82749