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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41027028_41027154_R

Intron Information:

Intron Rank:
129706
Intron Class:
major
Intron Phase:
Intron Coordinates:
41027028 - 41027154
Intron Length:
127

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTCAC
U12 Branch Point Sequence:
ATACACTTACCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.8
0.84
1
76.2
39.9
Major BPS
82.3
0.8
0.8
83.6
25.8
Major PPT
93.5
0.98
0.6
92.3
18.1
Minor 5ss
33
-1.9
3.5
49.2
47.1
Minor BPS
55.5
0.25
1.8
74.27
41.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016965
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029371
41026476 - 41059755
33280
ENSAPLT00000026465
41026476 - 41088878
62403