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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41038154_41054027_R

Intron Information:

Intron Rank:
129708
Intron Class:
major
Intron Phase:
Intron Coordinates:
41038154 - 41054027
Intron Length:
15874

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TCTCTTTCCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
CTTTCTTAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.8
85.7
25.5
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
83.3
0.75
0.7
76.5
32.1
Minor 5ss
40.8
-1
3
55
43.6
Minor BPS
63
0.49
1.8
80.63
41.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000016965
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000029371
41026476 - 41059755
33280
ENSAPLT00000026465
41026476 - 41088878
62403