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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41069287_41069806_R

Intron Information:

Intron Rank:
133139
Intron Class:
major
Intron Phase:
Intron Coordinates:
41069287 - 41069806
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGGAAG
5'SS Class:
major
3'SS Sequence:
AACCTTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
GATGCTATAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
67.4
39.2
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
73.1
0.52
0.8
70.2
35.4
Minor 5ss
26.3
-2.7
2.9
27.4
37.8
Minor BPS
55.2
0.14
1.7
65.3
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018872
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038562
41068786 - 41070705
1920