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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41069881_41070523_R

Intron Information:

Intron Rank:
133140
Intron Class:
major
Intron Phase:
Intron Coordinates:
41069881 - 41070523
Intron Length:
643

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGAATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTCACTCCTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTCAC
U12 Branch Point Sequence:
TCTCACTTCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
1
86.6
28.3
Major BPS
68.7
0.46
1
71.3
34
Major PPT
68.2
0.41
0.8
59.3
36.5
Minor 5ss
41.8
-0.9
3.2
63.2
41.1
Minor BPS
58.1
0.34
2
78.43
43.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018872
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038562
41068786 - 41070705
1920