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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41147130_41148201_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41147130 - 41148201
Intron Length:
1072

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTGCT
5'SS Class:
strong_major
3'SS Sequence:
TCCCACTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTAAC
U12 Branch Point Sequence:
TCCCACTCCACA
Flanking Amino Acid:
FEIKKSRPLTGLMDLAKEMT
Intron Amino Acid Position:
72

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.9
0.87
0.9
78.8
35.5
Major BPS
72
0.55
1
71.8
31.4
Major PPT
71
0.47
0.8
64.1
30.8
Minor 5ss
34.9
-1.7
3.2
42.4
44.3
Minor BPS
43.7
-0.5
2.1
53.87
44.3

Associated Gene:

Gene:
VASH1
Ensembl Gene ID:
ENSAPLG00000012819
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013355
41144079 - 41151200
7122