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Intron Name: Anas_platyrhynchos_platyrhynchos_5_41148277_41149293_F

Intron Information:

Intron Rank:

Intron Class:

minor

Intron Phase:

Intron Coordinates:

41148277 - 41149293

Intron Length:

1017

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAT|GTATCCTTT

5'SS Class:

strong_minor

3'SS Sequence:

TGGCTGCTGGCAG|T

3'SS Class:

minor_BPS

U2 Branch Point Sequence:

TCCTGAA

U12 Branch Point Sequence:

GTTTCCTGAACA

Flanking Amino Acid:

IKCLEAVILGIYLTNNMTTL

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

58.8

0.21

1.3

64.4

42.3

Major BPS

69.6

0.49

59.5

Major PPT

0.29

1.1

57.8

43.2

Minor 5ss

98.3

1.62

0.6

94.6

16.9

Minor BPS

79.7

0.93

1.3

85.68

32.9

Associated Gene:

Gene:

VASH1

Ensembl Gene ID:

ENSAPLG00000012819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013355

41144079 - 41151200

7122