Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41150188_41150847_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41150188 - 41150847

Intron Length:

660

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ACG|GTGAGTGGG

5'SS Class:

major

3'SS Sequence:

TCTTTGCTTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TATTAAT

U12 Branch Point Sequence:

TAGTTCTTAACC

Flanking Amino Acid:

PHRRNSRGDRRPSGEKKPTD

Intron Amino Acid Position:

262

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.7

0.7

63.5

42.9

Major BPS

91.8

1.04

0.7

90.2

19.3

Major PPT

86.2

0.81

0.8

80.6

31.4

Minor 5ss

27.1

-2.6

31.9

42.5

Minor BPS

79.2

0.9

1.1

79.16

Associated Gene:

Gene:

VASH1

Ensembl Gene ID:

ENSAPLG00000012819

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000013355

41144079 - 41151200

7122