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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41173863_41177649_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41173863 - 41177649
Intron Length:
3787

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGGTGC
5'SS Class:
major
3'SS Sequence:
CTTGGTTTCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATGAA
U12 Branch Point Sequence:
CTGACATTGACA
Flanking Amino Acid:
MENESEKDTADQNEEISDT
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.4
0.62
1
62.6
38.6
Major BPS
58.9
0.22
1
49.8
35.1
Major PPT
77.8
0.62
0.9
71.5
38.3
Minor 5ss
37.7
-1.4
3.2
49.7
46.9
Minor BPS
54.8
0.14
1.7
64.32
42

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055