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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41177764_41179338_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41177764 - 41179338
Intron Length:
1575

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAATATT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCTCTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACTCAT
U12 Branch Point Sequence:
CACTCATCAATA
Flanking Amino Acid:
QGSDIDLEVKDPGRAFAGVT
Intron Amino Acid Position:
48

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.2
0.85
0.8
89.3
23.4
Major BPS
74.8
0.62
0.9
75.3
29.7
Major PPT
89.1
0.88
0.6
85.8
21.3
Minor 5ss
35.6
-1.6
3
50.6
45.9
Minor BPS
49
-0
1.8
57.88
41.8

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055