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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41179515_41180041_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41179515 - 41180041
Intron Length:
527

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
TGTGTCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTTAC
U12 Branch Point Sequence:
CTCTGTTTACCT
Flanking Amino Acid:
GVKAIAIALVSNATVTHLEL
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
74
36.6
Major BPS
71.4
0.53
1.1
63.4
44
Major PPT
77.8
0.63
0.9
69.3
41.7
Minor 5ss
30.8
-2.2
2.6
33.6
35.6
Minor BPS
50.3
0.09
2.1
70.57
47

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055