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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41180150_41180907_F

Intron Information:

Intron Rank:
4
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41180150 - 41180907
Intron Length:
758

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTACCCAAC
5'SS Class:
weak_major
3'SS Sequence:
TGTTTCCTCCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
TCCTCCTTATCC
Flanking Amino Acid:
LRENCSLQELNISNNHLGTE
Intron Amino Acid Position:
143

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
59.5
0.22
1.2
56.1
43.1
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
81.7
0.71
0.8
73.6
36.9
Minor 5ss
44.3
-0.6
3
57.1
42.7
Minor BPS
69.3
0.59
1.6
73.85
43.3

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055