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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41188140_41189498_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41188140 - 41189498
Intron Length:
1359

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCTAC
5'SS Class:
strong_major
3'SS Sequence:
CTGCGTCTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGCTCAT
U12 Branch Point Sequence:
TGTGTTTTCTCT
Flanking Amino Acid:
QHPSPMKLIQKYLNEHNLRL
Intron Amino Acid Position:
393

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.5
32.2
Major BPS
70.9
0.52
1.1
71.4
36.6
Major PPT
68.1
0.41
0.9
65.4
36.2
Minor 5ss
38.7
-1.3
3
49.2
47.3
Minor BPS
38.7
-0.7
3.5
67.28
44.2

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055