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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41189607_41190255_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41189607 - 41190255
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGCCCC
5'SS Class:
major
3'SS Sequence:
CTTCTTCTCTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAACAT
U12 Branch Point Sequence:
TTTGCTAGCATT
Flanking Amino Acid:
VTAFRRAMIQQSSIPLDRVQ
Intron Amino Acid Position:
429

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1
58.5
40.7
Major BPS
71
0.52
1.1
77.7
35.3
Major PPT
81.4
0.71
0.7
80.8
24.4
Minor 5ss
39.8
-1.1
2.9
51.2
45.5
Minor BPS
44
-0.3
2.1
69.17
42.4

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055