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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41190342_41191651_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41190342 - 41191651
Intron Length:
1310

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGAG
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTGAATCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTCTTTTGAATC
Flanking Amino Acid:
DRNQTGIVDYSHLKDQKPAQ
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
74
0.54
1
74.5
39.2
Minor 5ss
26.6
-2.7
3
30.5
43.3
Minor BPS
63.1
0.39
1.4
70.08
36

Associated Gene:

Gene:
LRRC74A
Ensembl Gene ID:
ENSAPLG00000013057
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013601
41173835 - 41191889
18055