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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41292224_41292301_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
41292224 - 41292301
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-CG
5'SS Sequence:
GCG|GTGGCGGGC
5'SS Class:
weak_major
3'SS Sequence:
GCCGGGGGTGGCG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
GGGGCAC
U12 Branch Point Sequence:
GGCGGGGGCAGT
Flanking Amino Acid:
PPHGGLGGRGGGSSSEACGK
Intron Amino Acid Position:
239

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
50.9
0.02
1.2
43.3
38.6
Major BPS
37
-0.8
1.4
34.5
43.7
Major PPT
23.9
-1.5
3.2
25.7
36.6
Minor 5ss
28.8
-2.4
3.7
39.9
46.6
Minor BPS
18.6
-2.3
2.3
28.89
37

Associated Gene:

Gene:
IRF2BPL
Ensembl Gene ID:
ENSAPLG00000029704
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040443
41290791 - 41293812
3022