About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41343791_41345703_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
41343791 - 41345703
Intron Length:
1913

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAAATCT
5'SS Class:
major
3'SS Sequence:
ACTGTTTTTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTGTTTTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.6
0.67
0.9
73.6
30.9
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.4
0.64
0.8
73.4
36.5
Minor 5ss
34.5
-1.8
3.2
48.3
47.4
Minor BPS
78.3
0.97
1.2
90.89
33.1

Associated Gene:

Gene:
CIPC
Ensembl Gene ID:
ENSAPLG00000013142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023212
41343670 - 41352734
9065