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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41345879_41346798_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41345879 - 41346798
Intron Length:
920

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTTTAGAAA
5'SS Class:
major
3'SS Sequence:
CCACCTCTGGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAA
U12 Branch Point Sequence:
GACAGCTGAATT
Flanking Amino Acid:
TESDKDSGYSDGSSECLSAM
Intron Amino Acid Position:
25

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
61.7
0.28
1.2
62
37.7
Major BPS
66.7
0.41
1
57.8
39
Major PPT
65.4
0.35
1
60.9
34.9
Minor 5ss
33.4
-1.9
3
39.8
45.9
Minor BPS
46.6
-0.1
1.9
59.66
43.5

Associated Gene:

Gene:
CIPC
Ensembl Gene ID:
ENSAPLG00000013142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031108
41343670 - 41352734
9065
ENSAPLT00000023212
41343670 - 41352734
9065
ENSAPLT00000013683
41344194 - 41352971
8778