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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41346969_41350735_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41346969 - 41350735
Intron Length:
3767

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
TTATGCTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TTTTCCCCATTT
Flanking Amino Acid:
VVMKNVLVKQGSSSQLQSWT
Intron Amino Acid Position:
82

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.1
0.94
0.8
78.6
37.2
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
79.5
0.66
0.9
77.2
36.8
Minor 5ss
31.6
-2.1
3.1
38.7
46.6
Minor BPS
52.4
0.16
2.1
81.17
40.6

Associated Gene:

Gene:
CIPC
Ensembl Gene ID:
ENSAPLG00000013142
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031108
41343670 - 41352734
9065
ENSAPLT00000023212
41343670 - 41352734
9065
ENSAPLT00000013683
41344194 - 41352971
8778