Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41409718_41409861_R

Intron Information:

Intron Rank:

137532

Intron Class:

major

Intron Phase:

Intron Coordinates:

41409718 - 41409861

Intron Length:

144

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCAGGGCCG

5'SS Class:

strong_major

3'SS Sequence:

TCTGGGACTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTGGGAC

U12 Branch Point Sequence:

TGCTCTGGGACT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

87.1

0.88

0.9

66.6

38.9

Major BPS

43.7

-0.3

1.4

38.2

41.7

Major PPT

67.2

0.39

58.8

41.8

Minor 5ss

19.4

-3.5

29.7

43.3

Minor BPS

-0.1

2.2

68.15

43.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000021473

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000028526

41409453 - 41410164

712