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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41415178_41416280_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41415178 - 41416280
Intron Length:
1103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAGCA
5'SS Class:
strong_major
3'SS Sequence:
TGTGCTCCTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTTAG
U12 Branch Point Sequence:
GCCTTGTTAGTG
Flanking Amino Acid:
APEFLDHVRKVMLVIDAAVS
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.86
0.8
73.9
29.7
Major BPS
57.4
0.18
1.7
57.4
49.1
Major PPT
72.9
0.51
0.9
66.8
35.5
Minor 5ss
25.3
-2.8
3.1
30.4
42.9
Minor BPS
42.2
-0.7
2.2
42.64
43.5

Associated Gene:

Gene:
NGB
Ensembl Gene ID:
ENSAPLG00000030247
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024828
41413223 - 41417195
3973