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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41434331_41434516_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41434331 - 41434516
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGTGTTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTCTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TTTTGCTTACTT
Flanking Amino Acid:
KPWHWPINYQGLRFSGVNET
Intron Amino Acid Position:
566

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.1
0.78
0.9
72.8
34.5
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
90.4
0.91
0.7
89
28.1
Minor 5ss
40.2
-1.1
2.7
49.4
46.8
Minor BPS
65.3
0.56
2
87.41
38.9

Associated Gene:

Gene:
POMT2
Ensembl Gene ID:
ENSAPLG00000013786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041871
41428908 - 41453927
25020
ENSAPLT00000014436
41430538 - 41453927
23390