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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41434589_41436171_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41434589 - 41436171
Intron Length:
1583

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGATAC
5'SS Class:
strong_major
3'SS Sequence:
TTCTTATCTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
TTTTTCTTATCT
Flanking Amino Acid:
LLESHMVMIRGNSGLKPKDN
Intron Amino Acid Position:
542

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
1
72.1
34.3
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
82.2
0.72
0.7
78.1
29.5
Minor 5ss
37.8
-1.4
3
42.5
44.6
Minor BPS
79.8
1.01
1.4
95.48
31.1

Associated Gene:

Gene:
POMT2
Ensembl Gene ID:
ENSAPLG00000013786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041871
41428908 - 41453927
25020
ENSAPLT00000014436
41430538 - 41453927
23390