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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41445834_41446794_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41445834 - 41446794
Intron Length:
961

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATTTTAT
5'SS Class:
major
3'SS Sequence:
CTCTATTTTGTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTCAA
U12 Branch Point Sequence:
TTTGCTCTATTT
Flanking Amino Acid:
FAVHFTVLNKSGPGDGFFSS
Intron Amino Acid Position:
298

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.6
0.7
1
78.6
31.1
Major BPS
76.9
0.67
0.8
77.7
26.1
Major PPT
80.9
0.7
0.8
76.5
31.8
Minor 5ss
48
-0.2
2.5
66.9
44.3
Minor BPS
50
0.08
2
75.99
41.5

Associated Gene:

Gene:
POMT2
Ensembl Gene ID:
ENSAPLG00000013786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041871
41428908 - 41453927
25020
ENSAPLT00000014436
41430538 - 41453927
23390