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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41449754_41451463_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41449754 - 41451463
Intron Length:
1710

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGATAA
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAC
U12 Branch Point Sequence:
TACTCTCTGACC
Flanking Amino Acid:
SMVKCNACADRPFSASWWFW
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.2
0.99
0.8
83
23.8
Major BPS
78.8
0.71
0.9
69.7
37.1
Major PPT
76.5
0.6
0.9
69.6
36.8
Minor 5ss
37.3
-1.4
3
46.9
48.4
Minor BPS
57.3
0.21
1.7
67.21
38.6

Associated Gene:

Gene:
POMT2
Ensembl Gene ID:
ENSAPLG00000013786
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041871
41428908 - 41453927
25020
ENSAPLT00000014436
41430538 - 41453927
23390