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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41454627_41455080_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41454627 - 41455080
Intron Length:
454

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTGC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTTAT
U12 Branch Point Sequence:
ACTACTTTATCT
Flanking Amino Acid:
SCLGAAVRVKPILYSYFRSS
Intron Amino Acid Position:
27

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
69.2
38.5
Major BPS
84.1
0.85
0.9
75.3
39.4
Major PPT
86.2
0.81
0.6
85
22.5
Minor 5ss
38.8
-1.3
3
50.2
46.4
Minor BPS
60.8
0.42
1.6
74.79
42.2

Associated Gene:

Gene:
GSTZ1
Ensembl Gene ID:
ENSAPLG00000014216
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014846
41454469 - 41460776
6308