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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41456110_41456675_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41456110 - 41456675
Intron Length:
566

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCCACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
GTTGCAGTAATC
Flanking Amino Acid:
VNLLKDGGQQLSAEFKAVNP
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
80
0.75
1
78.6
31
Major PPT
80.8
0.69
0.8
75.9
32.6
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
47.2
-0.2
2.3
64
41.8

Associated Gene:

Gene:
GSTZ1
Ensembl Gene ID:
ENSAPLG00000014216
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014846
41454469 - 41460776
6308