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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41456757_41457233_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41456757 - 41457233
Intron Length:
477

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTCATTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
TCCCCAATAACC
Flanking Amino Acid:
KIDGITLSQSLAIIHYLEDT
Intron Amino Acid Position:
94

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
76.7
29.7
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
83.4
0.75
0.9
77.5
35.6
Minor 5ss
34.5
-1.8
2.8
40.8
45.4
Minor BPS
49.2
-0
1.9
62.28
42.7

Associated Gene:

Gene:
GSTZ1
Ensembl Gene ID:
ENSAPLG00000014216
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014846
41454469 - 41460776
6308