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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41457360_41457858_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41457360 - 41457858
Intron Length:
499

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATTGCTT
5'SS Class:
major
3'SS Sequence:
CTTACCTTCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAC
U12 Branch Point Sequence:
CTTACCTTCACA
Flanking Amino Acid:
HIASGIQPLQNLSVLKQMGE
Intron Amino Acid Position:
136

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1.1
68
42.6
Major BPS
75.8
0.64
0.9
75.6
25.3
Major PPT
78.2
0.64
0.8
71.9
32.5
Minor 5ss
42.8
-0.8
3.4
65
46.3
Minor BPS
65.9
0.49
1.8
75.92
41.5

Associated Gene:

Gene:
GSTZ1
Ensembl Gene ID:
ENSAPLG00000014216
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014846
41454469 - 41460776
6308