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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41460135_41460649_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41460135 - 41460649
Intron Length:
515

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAT
5'SS Class:
strong_major
3'SS Sequence:
CTTCCTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CACAAAT
U12 Branch Point Sequence:
TGTACCTCACAA
Flanking Amino Acid:
CLVPQVANAERFNVDLGPYP
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.5
0.91
0.9
88.9
24.6
Major BPS
57.1
0.18
1
62.9
30.6
Major PPT
88.5
0.87
0.7
83.8
24.3
Minor 5ss
37.5
-1.4
2.8
51.2
45.3
Minor BPS
48
-0.1
2
62.97
42.5

Associated Gene:

Gene:
GSTZ1
Ensembl Gene ID:
ENSAPLG00000014216
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014846
41454469 - 41460776
6308