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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41462310_41462469_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41462310 - 41462469
Intron Length:
160

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCTACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTGAT
U12 Branch Point Sequence:
TTTTCCTGTATT
Flanking Amino Acid:
ALQDAFVFHLDTLSWSTVRH
Intron Amino Acid Position:
714

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.3
1.09
0.7
86.7
22.1
Major BPS
88.6
0.96
0.8
77.7
37.1
Major PPT
84.4
0.77
0.7
82
28.3
Minor 5ss
32
-2.1
3.1
39.9
46.1
Minor BPS
68.6
0.67
1.8
89.01
35.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014