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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41463313_41463642_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41463313 - 41463642
Intron Length:
330

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
CCCTGTCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
CTTTGTCTACCT
Flanking Amino Acid:
YFSDMHILDLGFMEYTPVPF
Intron Amino Acid Position:
663

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
71.6
40.1
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
79.3
0.66
0.8
75.9
32.7
Minor 5ss
32.4
-2
2.9
32.3
42
Minor BPS
46.5
-0.1
2.3
71.75
45.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014