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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41463735_41464055_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
41463735 - 41464055
Intron Length:
321

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGAGTG
5'SS Class:
major
3'SS Sequence:
CTTCTTTGATCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTGAA
U12 Branch Point Sequence:
TCTTCTTTGATC
Flanking Amino Acid:
SEGEKPLPRFGHSATLLKNK
Intron Amino Acid Position:
632

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1
65.9
40.1
Major BPS
67
0.42
1.1
57.3
41.7
Major PPT
76.4
0.59
1
77.3
35.6
Minor 5ss
28.2
-2.5
3.3
30
43
Minor BPS
74.4
0.75
1.1
76.89
33.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014