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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41466000_41466803_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41466000 - 41466803
Intron Length:
804

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTCCCCTCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAG
U12 Branch Point Sequence:
GCTCCCAGCACG
Flanking Amino Acid:
AEDLAVEELQGSPSPRWRHA
Intron Amino Acid Position:
462

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
82.1
31
Major BPS
63.4
0.33
1.6
73.6
41.8
Major PPT
73.4
0.53
0.8
64.8
30.7
Minor 5ss
31.4
-2.1
3.2
42.1
45
Minor BPS
41.8
-0.7
2.1
47.75
44.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014