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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41466828_41467838_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41466828 - 41467838
Intron Length:
1011

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAACCGGC
5'SS Class:
major
3'SS Sequence:
GTTTCCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTTAT
U12 Branch Point Sequence:
CTTTCCTTATGG
Flanking Amino Acid:
RASEKDLDAEDLAVEELQGS
Intron Amino Acid Position:
454

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.2
61.5
44.8
Major BPS
78.8
0.72
1
67.9
40.1
Major PPT
86.6
0.82
0.8
80.9
31
Minor 5ss
42.2
-0.9
3.3
59.3
45.5
Minor BPS
58.4
0.13
2
66.83
46.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014