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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41468059_41468569_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41468059 - 41468569
Intron Length:
511

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCT|GTATGTGTA
5'SS Class:
major
3'SS Sequence:
TTTTTTTTCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTGAC
U12 Branch Point Sequence:
TTTTTTTTCACA
Flanking Amino Acid:
LSQDLEDPSAVKSQSSAIAA
Intron Amino Acid Position:
381

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.1
0.43
1.1
67.5
37.7
Major BPS
74.1
0.6
1
66.7
39.9
Major PPT
94.4
1
0.5
91.2
20.6
Minor 5ss
45.3
-0.5
3.2
67
44.2
Minor BPS
69.5
0.61
1.7
82.25
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014