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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41470569_41477010_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41470569 - 41477010
Intron Length:
6442

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCAGG
5'SS Class:
major
3'SS Sequence:
TTTTCTCTCCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
TTCTCTGTGATT
Flanking Amino Acid:
KTGWTTITFRPVQQDGLPGL
Intron Amino Acid Position:
281

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.1
59.7
46.7
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
87.9
0.85
0.7
81
31
Minor 5ss
32.9
-2
2.8
31.4
42.5
Minor BPS
56.5
0.29
2
78.04
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014