About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41477124_41478815_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41477124 - 41478815
Intron Length:
1692

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
CAG|GCGAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCACTACCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTTTTTACTA
Flanking Amino Acid:
EVQAGSHDYPEHLGGQEGVR
Intron Amino Acid Position:
243

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.6
0.86
0.9
75.9
29.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
71.3
0.48
0.9
62.6
38.3
Minor 5ss
13.7
-4.2
3.6
20.6
37.7
Minor BPS
60.6
0.33
1.6
69.67
37.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014349
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014950
41462095 - 41484108
22014