Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41480650_41481577_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

41480650 - 41481577

Intron Length:

928

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

GTGCTTTGTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTTAC

U12 Branch Point Sequence:

ATCTTTGTGACT

Flanking Amino Acid:

LPDQTEPTKEEAVVRMTNYH

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

81.5

0.78

0.9

71.6

36.1

Major PPT

73.8

0.54

68.8

41.9

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

50.2

0.09

71.91

39.8

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000014349

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000014950

41462095 - 41484108

22014