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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41484503_41488509_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
41484503 - 41488509
Intron Length:
4007

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCCCCGG
5'SS Class:
weak_major
3'SS Sequence:
TCTTGTATTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
AATTCCTGATAT
Flanking Amino Acid:
MGVTDFGHMQEISRHVRELL
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
57.7
0.18
1.2
41.7
46.7
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
36.3
-1.6
3.2
47.8
47.7
Minor BPS
54.9
0.23
1.8
74.51
41.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014468
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015066
41484473 - 41492317
7845