Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41493448_41493525_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

41493448 - 41493525

Intron Length:

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

CAG|GCCCTCAGG

5'SS Class:

major

3'SS Sequence:

GGGGACCTCACAG|C

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

GTGTCAT

U12 Branch Point Sequence:

GGTGTCATATCG

Flanking Amino Acid:

HALFFCRLLQHRALPKEAVP

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

61.7

0.28

1.3

49.8

46.2

Major BPS

67.1

0.42

1.4

71.4

45.1

Major PPT

56.2

0.14

46.1

41.3

Minor 5ss

22.9

-3.1

3.7

32.2

41.9

Minor BPS

44.1

-0.5

49.39

44.1

Associated Gene:

Gene:

NOXRED1

Ensembl Gene ID:

ENSAPLG00000014469

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015071

41488034 - 41496878

8845