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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41512021_41513621_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
41512021 - 41513621
Intron Length:
1601

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACATGAG
5'SS Class:
major
3'SS Sequence:
GCTGTCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATTAT
U12 Branch Point Sequence:
ATTGGTTTCACG
Flanking Amino Acid:
IKTYISTLKTEFTQGMILPT
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.7
0.61
1.1
65.8
40.2
Major BPS
72.4
0.56
1.1
63.7
42.3
Major PPT
78.6
0.64
0.9
69
41.9
Minor 5ss
30.3
-2.3
3.4
39.7
46.3
Minor BPS
45.7
-0.4
2.3
56.74
45.3

Associated Gene:

Gene:
AHSA1
Ensembl Gene ID:
ENSAPLG00000015078
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015739
41511439 - 41554388
42950