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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_5_41529892_41530045_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
41529892 - 41530045
Intron Length:
154

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGGGAC
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
CCATCCTCACAG
Flanking Amino Acid:
CLTPFCTSMEVSASSDPRAA
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.2
0.83
0.9
72.6
32.3
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
82.8
0.74
0.7
77
25
Minor 5ss
24.1
-3
3.3
31
43.4
Minor BPS
44.4
-0.5
2
45.49
46.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000028338
Chromosome:
5

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024291
41525739 - 41530198
4460